Failure while fetching StreamChunkId in Spark

10,349

Solution 1

This issue related to Netty version mismatch,You need to make sure Hadoop and Spark and HDFS running with same Netty version.

Solution 2

I had a similar driver stacktrace while running on Mesos, with an external shuffle service. The issue was that the shuffle service and the executors had a different config for spark temp directory (see spark.local.dir config).

p.s. More details on the accepted answer: https://community.hortonworks.com/questions/103267/massive-errors-on-spark-shuffle-and-conneciton-res.html

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St.Antario
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St.Antario

Updated on June 04, 2022

Comments

  • St.Antario
    St.Antario over 1 year

    I'm running my spark job in the following container. The application is not finished successfully and I have the following failed stage exception:

    org.apache.spark.shuffle.FetchFailedException: Failure while fetching StreamChunkId{streamId=1484813259338, chunkIndex=2}: java.io.FileNotFoundException
    

    The full stack trace is this:

    org.apache.spark.shuffle.FetchFailedException: Failure while fetching StreamChunkId{streamId=1484813259338, chunkIndex=2}: java.io.FileNotFoundException: /hadoop/yarn/local/usercache/usrnm/appcache/application_1506332297432_0037/blockmgr-a6cb2380-83af-4802-8134-89f97ea3c37a/0e/shuffle_14_2236_0.index (No such file or directory)
        at java.io.FileInputStream.open0(Native Method)
        at java.io.FileInputStream.open(FileInputStream.java:195)
        at java.io.FileInputStream.<init>(FileInputStream.java:138)
        at org.apache.spark.shuffle.IndexShuffleBlockResolver.getBlockData(IndexShuffleBlockResolver.scala:199)
        at org.apache.spark.storage.BlockManager.getBlockData(BlockManager.scala:351)
        at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$1.apply(NettyBlockRpcServer.scala:61)
        at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$1.apply(NettyBlockRpcServer.scala:60)
        at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
        at scala.collection.convert.Wrappers$IteratorWrapper.next(Wrappers.scala:31)
        at org.apache.spark.network.server.OneForOneStreamManager.getChunk(OneForOneStreamManager.java:89)
        at org.apache.spark.network.server.TransportRequestHandler.processFetchRequest(TransportRequestHandler.java:125)
        at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:103)
        at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911)
        at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
        at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
        at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
        at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
        at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
        at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
        at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
        at java.lang.Thread.run(Thread.java:745)
    
        at org.apache.spark.storage.ShuffleBlockFetcherIterator.throwFetchFailedException(ShuffleBlockFetcherIterator.scala:442)
        at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:418)
        at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:59)
        at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
        at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
        at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
        at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32)
        at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
        at org.apache.spark.util.collection.ExternalAppendOnlyMap.insertAll(ExternalAppendOnlyMap.scala:154)
        at org.apache.spark.Aggregator.combineCombinersByKey(Aggregator.scala:50)
        at org.apache.spark.shuffle.BlockStoreShuffleReader.read(BlockStoreShuffleReader.scala:83)
        at org.apache.spark.rdd.ShuffledRDD.compute(ShuffledRDD.scala:105)
        at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
        at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
        at org.apache.spark.rdd.CoalescedRDD$$anonfun$compute$1.apply(CoalescedRDD.scala:100)
        at org.apache.spark.rdd.CoalescedRDD$$anonfun$compute$1.apply(CoalescedRDD.scala:99)
        at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
        at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
        at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$12$$anonfun$apply$4.apply$mcV$sp(PairRDDFunctions.scala:1137)
        at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$12$$anonfun$apply$4.apply(PairRDDFunctions.scala:1137)
        at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$12$$anonfun$apply$4.apply(PairRDDFunctions.scala:1137)
        at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1375)
        at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$12.apply(PairRDDFunctions.scala:1145)
        at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$12.apply(PairRDDFunctions.scala:1125)
        at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
        at org.apache.spark.scheduler.Task.run(Task.scala:108)
        at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
    Caused by: org.apache.spark.network.client.ChunkFetchFailureException: Failure while fetching StreamChunkId{streamId=1484813259338, chunkIndex=2}: java.io.FileNotFoundException: /hadoop/yarn/local/usercache/usrnm/appcache/application_1506332297432_0037/blockmgr-a6cb2380-83af-4802-8134-89f97ea3c37a/0e/shuffle_14_2236_0.index (No such file or directory)
        at java.io.FileInputStream.open0(Native Method)
        at java.io.FileInputStream.open(FileInputStream.java:195)
        at java.io.FileInputStream.<init>(FileInputStream.java:138)
        at org.apache.spark.shuffle.IndexShuffleBlockResolver.getBlockData(IndexShuffleBlockResolver.scala:199)
        at org.apache.spark.storage.BlockManager.getBlockData(BlockManager.scala:351)
        at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$1.apply(NettyBlockRpcServer.scala:61)
        at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$1.apply(NettyBlockRpcServer.scala:60)
        at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
        at scala.collection.convert.Wrappers$IteratorWrapper.next(Wrappers.scala:31)
        at org.apache.spark.network.server.OneForOneStreamManager.getChunk(OneForOneStreamManager.java:89)
        at org.apache.spark.network.server.TransportRequestHandler.processFetchRequest(TransportRequestHandler.java:125)
        at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:103)
        at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911)
        at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
        at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
        at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
        at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
        at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
        at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
        at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
        at java.lang.Thread.run(Thread.java:745)
    
        at org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:182)
        at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:120)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
        at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
        at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911)
        at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
        at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
        at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
        at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
        at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
        at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
        at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
    

    What kind of a problem it might be about?

  • St.Antario
    St.Antario about 6 years
    Very interesting. Thanks much. But how do u know that?
  • supernatural
    supernatural over 3 years
    and how do I check for this version mismatch ?