ggplot: boxplot number of observations as x-axis labels
look at this answer, It is not on the label but it works - I have used this
Modify x-axis labels in each facet
You can also do as follows, I also have used that
library(ggplot2)
df <- data.frame(group=sample(c("a","b","c"),100,replace=T),x=rnorm(100),y=rnorm(100)*rnorm(100))
xlabs <- paste(levels(df$group),"\n(N=",table(df$group),")",sep="")
ggplot(df,aes(x=group,y=x,color=group))+geom_boxplot()+scale_x_discrete(labels=xlabs)
This also works
library(ggplot2) library(reshape2)
df <- data.frame(group=sample(c("a","b","c"),100,replace=T),x=rnorm(100),y=rnorm(100)*rnorm(100))
df1 <- melt(df)
df2 <- ddply(df1,.(group,variable),transform,N=length(group))
df2$label <- paste0(df2$group,"\n","(n=",df2$N,")")
ggplot(df2,aes(x=label,y=value,color=group))+geom_boxplot()+facet_grid(.~variable)
sina
Updated on June 25, 2022Comments
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sina almost 2 years
I have successfully created a very nice boxplot (for my purposes) categorized by a factor and binned, according to the answer in my previous post here: ggplot: arranging boxplots of multiple y-variables for each group of a continuous x
Now, I would like to customize the x-axis labels according to the number of observations in each boxplot.
require (ggplot2) require (plyr) library(reshape2) set.seed(1234) x<- rnorm(100) y.1<-rnorm(100) y.2<-rnorm(100) y.3<-rnorm(100) y.4<-rnorm(100) df<- (as.data.frame(cbind(x,y.1,y.2,y.3,y.4))) dfmelt<-melt(df, measure.vars = 2:5) dfmelt$bin <- factor(round_any(dfmelt$x,0.5)) dfmelt.sum<-summary(dfmelt$bin) ggplot(dfmelt, aes(x=bin, y=value, fill=variable))+ geom_boxplot()+ facet_grid(.~bin, scales="free")+ labs(x="number of observations")+ scale_x_discrete(labels= dfmelt.sum)
dfmelt.sum only gives me the total number of observations for each bin not for each boxplot. Boxplots statistics give me the number of observations for each boxplot.
dfmelt.stat<-boxplot(value~variable+bin, data=dfmelt) dfmelt.n<-dfmelt.stat$n
But how do I add tick marks and labels for each boxplot?
Thanks, Sina
UPDATE
I have continued working on this. The biggest problem is that in the code above, only one tick mark is provided per facet. Since I also wanted to plot the means for each boxplot, I have used interaction to plot each boxplot individually, which also adds tick marks on the x-axis for each boxplot:
require (ggplot2) require (plyr) library(reshape2) set.seed(1234) x<- rnorm(100) y.1<-rnorm(100) y.2<-rnorm(100) y.3<-rnorm(100) y.4<-rnorm(100) df<- (as.data.frame(cbind(x,y.1,y.2,y.3,y.4))) dfmelt<-melt(df, measure.vars = 2:5) dfmelt$bin <- factor(round_any(dfmelt$x,0.5)) dfmelt$f2f1<-interaction(dfmelt$variable,dfmelt$bin) dfmelt_mean<-aggregate(value~variable*bin, data=dfmelt, FUN=mean) dfmelt_mean$f2f1<-interaction(dfmelt_mean$variable, dfmelt_mean$bin) dfmelt_length<-aggregate(value~variable*bin, data=dfmelt, FUN=length) dfmelt_length$f2f1<-interaction(dfmelt_length$variable, dfmelt_length$bin)
On the side: maybe there is a more elegant way to combine all those interactions. I'd be happy to improve.
ggplot(aes(y = value, x = f2f1, fill=variable), data = dfmelt)+ geom_boxplot()+ geom_point(aes(x=f2f1, y=value),data=dfmelt_mean, color="red", shape=3)+ facet_grid(.~bin, scales="free")+ labs(x="number of observations")+ scale_x_discrete(labels=dfmelt_length$value)
This gives me tick marks on for each boxplot which can be potentially labeled. However, using labels in scale_x_discrete only repeats the first four values of dfmelt_length$value in each facet.
How can that be circumvented? Thanks, Sina