How to install multiple packages in conda from a file without creating a new environment?
Conda Env Update
If you have a YAML file, then the most efficacious way to apply it to a given env is with conda env update
:
conda env update --file environment.yml
⚠️ Warning: The
conda env
commands don't prompt you to review and approve the transactions - it simply executes the changes. Be sure to carefully review the YAML file to ensure all of the changes are desired.
Conda Install
The format that Conda accepts for conda install --file
is that which matches the output of conda list --export
. It's not a YAML, but a simple text file with one package per line, similar to the one produced by pip freeze
, except for the single equality sign ('=' rather than ==
).
conda list --export
appdirs=1.4.3=py36h28b3542_0
asn1crypto=0.24.0=py36_0
...
zope=1.0=py36_1
zope.interface=4.5.0=py36h1de35cc_0
Note that the builds are not required, e.g., the following would also work and may actually be slightly more portable across architectures
appdirs=1.4.3
asn1crypto=0.24.0
...
zope=1.0
zope.interface=4.5.0
Unfortunately, conda install
doesn't support PyPI packages; you'd have to install those separately via pip install
in your activated env.
O.rka
I am an academic researcher studying machine-learning and microorganisms
Updated on January 07, 2022Comments
-
O.rka over 2 years
I took these from yml file of packages that my current environment is missing. How do I just install these within my current environment?
channels: - defaults dependencies: - appdirs=1.4.3=py36h28b3542_0 - asn1crypto=0.24.0=py36_0 - attrs=18.2.0=py36h28b3542_0 - blas=1.0=mkl - cffi=1.11.5=py36h6174b99_1 - constantly=15.1.0=py36h28b3542_0 - cryptography=2.3.1=py36hdbc3d79_0 - freetype=2.9.1=hb4e5f40_0 - html5lib=1.0.1=py36_0 - idna=2.7=py36_0 - incremental=17.5.0=py36_0 - intel-openmp=2019.0=118 - libgfortran=3.0.1=h93005f0_2 - libxml2=2.9.4=0 - libxslt=1.1.29=hc208041_6 - lxml=4.1.1=py36h6c891f4_0 - mkl=2019.0=118 - mkl_fft=1.0.6=py36hb8a8100_0 - mkl_random=1.0.1=py36h5d10147_1 - numpy=1.15.3=py36h6a91979_0 - numpy-base=1.15.3=py36h8a80b8c_0 - pyasn1=0.4.4=py36h28b3542_0 - pyasn1-modules=0.2.2=py36_0 - pycparser=2.19=py36_0 - pyopenssl=18.0.0=py36_0 - service_identity=17.0.0=py36h28b3542_0 - twisted=17.5.0=py36_0 - zope=1.0=py36_1 - zope.interface=4.5.0=py36h1de35cc_0 - pip: - absl-py==0.2.2 - ete3==3.1.1 - grpcio==1.12.1