How to use Eclipse (IDE) with Cygwin (Linux emulator)?

Question

I apologize in advance for the stupidity of this question, but I am confused as h@&! and not even sure what to ask anymore.

For my math thesis - i.e., I am not a programmer - I have to write C code which uses the CVODE library, which is part of SUNDIALS (do you need all that detail?). But I can't work directly on the Gentoo Linux cluster where the proram will ultimately run.

According to the SUNDIALS' website, CVODE has very rarely been compiled and used in a native Windows environment, but it has been used using Cygwin. So I want to set up a C programming environment, including an IDE (especially a debugger), on my Windows PC, using Cygwin.

I have installed and executed the basic Cygwin (plus a package for nano editor) on my 64-bit Windows PC. I want to use Eclipse IDE, which is available for Linux and Windows, and can really only be used in a graphical interface (I think). I think I should set Eclipse up next (and then CVODE after that). That's what I'm trying to do now.

My basic question is how do I setup Eclipse to work with Cygwin? What Cygwin packages do I need to run Eclipse?

From the docs, I see that Cygwin has a server (Cygserver), but does not have a graphical interface. Or, it might have a graphical interface called Cygwin/X. Do I setup Eclipse in Windows to communicate with Cygserver, then do my work in Windows, but compilations and so forth would take place in the Cygserver? Or, do I install Cygwin/X and use a Linux version of Eclipse which, hopefully, works with Cygwin/X? If both are possible options, which is easier (I'm guessing the latter).

Solution

Cygwin is nice but I've run into issues now and then with it. I would recommend that you download Virtualbox or some similar VM software and install the same Linux that is there on your production cluster inside it. Then you'll have an environment on your development machine which matches the production one.

Now, install eclipse (and anything else you want) inside the VM and you can develop the software there smoothly without worrying about tangential issues like cygwin and the rest.