Pip install pygraphviz fails: Failed building wheel for pygraphviz
23,983
Solution 1
The comment by Andrew brought me on the right path. Thank you for that.
It turns out that a detailed solution for installing pygraphviz on macOS is already available on stackoverflow, see this solution by teut.
Solution 2
Try this :
sudo apt-get install python-dev graphviz libgraphviz-dev pkg-config
or the following might be needed if you're using Python 3:
sudo apt-get install python3-dev graphviz libgraphviz-dev pkg-config
then
sudo pip install pygraphviz
Solution 3
Basically you need to download graphviz first using brew:
brew install graphviz
pip install graphviz
pip install pygraphviz
You can also try using pip3 in place of pip just in case there is Python's version issue. Hope it helps.
Author by
Unis
Updated on July 14, 2022Comments
-
Unis almost 2 years
I have troubles installing pygraphviz on macOS 10.10.5. I have a fully functional installation of Python 2.7.x, and I'd like to run the test example of queueing-tool, which requires installing pygraphviz using pip.
When executing the command
pip install pygraphviz, I get the following lengthy error message:Collecting pygraphviz Using cached pygraphviz-1.3.1.zip Building wheels for collected packages: pygraphviz Running setup.py bdist_wheel for pygraphviz ... error Complete output from command /usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/tmpcYcoACpip-wheel- --python-tag cp27: running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.10-x86_64-2.7 creating build/lib.macosx-10.10-x86_64-2.7/pygraphviz copying pygraphviz/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz copying pygraphviz/agraph.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz copying pygraphviz/graphviz.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz copying pygraphviz/release.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz copying pygraphviz/version.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz creating build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_attributes.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz/tests running egg_info writing pygraphviz.egg-info/PKG-INFO writing top-level names to pygraphviz.egg-info/top_level.txt writing dependency_links to pygraphviz.egg-info/dependency_links.txt warning: manifest_maker: standard file '-c' not found reading manifest file 'pygraphviz.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.svn' found anywhere in distribution no previously-included directories found matching 'doc/build' writing manifest file 'pygraphviz.egg-info/SOURCES.txt' copying pygraphviz/graphviz.i -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.10-x86_64-2.7/pygraphviz running build_ext building 'pygraphviz._graphviz' extension creating build/temp.macosx-10.10-x86_64-2.7 creating build/temp.macosx-10.10-x86_64-2.7/pygraphviz clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.10-x86_64-2.7/pygraphviz/graphviz_wrap.o pygraphviz/graphviz_wrap.c:3321:12: warning: incompatible pointer to integer conversion returning 'Agsym_t *' (aka 'struct Agsym_s *') from a function with result type 'int' [-Wint-conversion] return agattr(g, kind, name, val); ^~~~~~~~~~~~~~~~~~~~~~~~~~ pygraphviz/graphviz_wrap.c:3405:7: warning: unused variable 'fd1' [-Wunused-variable] int fd1 ; ^ pygraphviz/graphviz_wrap.c:3406:13: warning: unused variable 'mode_obj1' [-Wunused-variable] PyObject *mode_obj1 ; ^ pygraphviz/graphviz_wrap.c:3407:13: warning: unused variable 'mode_byte_obj1' [-Wunused-variable] PyObject *mode_byte_obj1 ; ^ pygraphviz/graphviz_wrap.c:3408:9: warning: unused variable 'mode1' [-Wunused-variable] char *mode1 ; ^ pygraphviz/graphviz_wrap.c:3463:7: warning: unused variable 'fd2' [-Wunused-variable] int fd2 ; ^ pygraphviz/graphviz_wrap.c:3464:13: warning: unused variable 'mode_obj2' [-Wunused-variable] PyObject *mode_obj2 ; ^ pygraphviz/graphviz_wrap.c:3465:13: warning: unused variable 'mode_byte_obj2' [-Wunused-variable] PyObject *mode_byte_obj2 ; ^ pygraphviz/graphviz_wrap.c:3466:9: warning: unused variable 'mode2' [-Wunused-variable] char *mode2 ; ^ 9 warnings generated. clang -bundle -undefined dynamic_lookup build/temp.macosx-10.10-x86_64-2.7/pygraphviz/graphviz_wrap.o -L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib -lcgraph -lcdt -o build/lib.macosx-10.10-x86_64-2.7/pygraphviz/_graphviz.so installing to build/bdist.macosx-10.10-x86_64/wheel running install Trying pkg-config Package libcgraph was not found in the pkg-config search path. Perhaps you should add the directory containing `libcgraph.pc' to the PKG_CONFIG_PATH environment variable No package 'libcgraph' found Traceback (most recent call last): File "<string>", line 1, in <module> File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup.py", line 87, in <module> tests_require=['nose>=0.10.1', 'doctest-ignore-unicode>=0.1.0',], File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/lib/python2.7/site-packages/wheel/bdist_wheel.py", line 215, in run self.run_command('install') File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup_commands.py", line 44, in modified_run self.include_path, self.library_path = get_graphviz_dirs() File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup_extra.py", line 121, in get_graphviz_dirs include_dirs, library_dirs = _pkg_config() File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup_extra.py", line 44, in _pkg_config output = S.check_output(['pkg-config', '--libs-only-L', 'libcgraph']) File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 574, in check_output raise CalledProcessError(retcode, cmd, output=output) subprocess.CalledProcessError: Command '['pkg-config', '--libs-only-L', 'libcgraph']' returned non-zero exit status 1 ---------------------------------------- Failed building wheel for pygraphviz Running setup.py clean for pygraphviz Failed to build pygraphviz Installing collected packages: pygraphviz Running setup.py install for pygraphviz ... error Complete output from command /usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-7HXgN6-record/install-record.txt --single-version-externally-managed --compile: running install Trying pkg-config Package libcgraph was not found in the pkg-config search path. Perhaps you should add the directory containing `libcgraph.pc' to the PKG_CONFIG_PATH environment variable No package 'libcgraph' found Traceback (most recent call last): File "<string>", line 1, in <module> File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup.py", line 87, in <module> tests_require=['nose>=0.10.1', 'doctest-ignore-unicode>=0.1.0',], File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup_commands.py", line 44, in modified_run self.include_path, self.library_path = get_graphviz_dirs() File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup_extra.py", line 121, in get_graphviz_dirs include_dirs, library_dirs = _pkg_config() File "/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup_extra.py", line 44, in _pkg_config output = S.check_output(['pkg-config', '--libs-only-L', 'libcgraph']) File "/usr/local/Cellar/python/2.7.12_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 574, in check_output raise CalledProcessError(retcode, cmd, output=output) subprocess.CalledProcessError: Command '['pkg-config', '--libs-only-L', 'libcgraph']' returned non-zero exit status 1 ---------------------------------------- Command "/usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-7HXgN6-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/x3/nr48r8q10dv1lb9l9t_yx7kh0000gq/T/pip-build-Ljj4Ox/pygraphviz/I am unsure about how to address the above error. All other Python packages, such as numpy or networkx, were straightforward to install. Any help would be greatly appreciated. Thanks a lot in advance.