python pandas read_csv delimiter in column data

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Dealing with unquoted delimiters is always a nuisance. In this case, since it looks like the broken text is known to be surrounded by three correctly-encoded columns, we can recover. TBH, I'd just use the standard Python reader and build a DataFrame once from that:

import csv
import pandas as pd

with open("semi.dat", "r", newline="") as fp:
    reader = csv.reader(fp, delimiter=";")
    rows = [x[:1] + [';'.join(x[1:-2])] + x[-2:] for x in reader] 
    df = pd.DataFrame(rows)

which produces

       0                                              1  2  3
0  12012               My Name is Mike. What is your's?  3  0
1   1522  In my opinion: It's cool; or at least not bad  4  0
2  21427                    Hello. I like this feature!  5  1

Then we can immediately save it and get something quoted correctly:

In [67]: df.to_csv("fixedsemi.dat", sep=";", header=None, index=False)

In [68]: more fixedsemi.dat
12012;My Name is Mike. What is your's?;3;0
1522;"In my opinion: It's cool; or at least not bad";4;0
21427;Hello. I like this feature!;5;1

In [69]: df2 = pd.read_csv("fixedsemi.dat", sep=";", header=None)

In [70]: df2
Out[70]: 
       0                                              1  2  3
0  12012               My Name is Mike. What is your's?  3  0
1   1522  In my opinion: It's cool; or at least not bad  4  0
2  21427                    Hello. I like this feature!  5  1
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Tomas Pazur
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Tomas Pazur

Updated on June 18, 2020

Comments

  • Tomas Pazur
    Tomas Pazur almost 4 years

    I'm having this type of CSV file:

    12012;My Name is Mike. What is your's?;3;0 
    1522;In my opinion: It's cool; or at least not bad;4;0
    21427;Hello. I like this feature!;5;1
    

    I want to get this data into da pandas.DataFrame. But read_csv(sep=";") throws exceptions due to the semicolon in the user generated message column in line 2 (In my opinion: It's cool; or at least not bad). All remaining columns constantly have numeric dtypes.

    What is the most convenient method to manage this?

  • Tomas Pazur
    Tomas Pazur almost 9 years
    Works fine. This is a nice workaround. Thanks! Anyway , is there a way to hook into the pandas parser and do the splitting and joining stuff "on the fly" ?
  • Mehdi Golzadeh
    Mehdi Golzadeh over 3 years
    Is there any better solution for large CSV files? this takes too much time.