Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels

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There are several problems here:

  1. You are specifying variables as character strings, so this line (fit<-lm(y~x,data=dat)) is interpreted by R as fit<-lm("farm"~"land",data=dat).
  2. It is easier to not specify default variables in your function because of scoping issues.

I would consider the following instead:

tlad <- function(y, x){      
  fit <- lm(y~x)
  beta.out <- optim(fit$coefficients, sum.abs.dev)
  return(beta.out)
}

dat <- read.csv("FarmLandArea.csv")
tlad(dat$farm, dat$land)
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Mona Jalal
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Mona Jalal

contact me at [email protected] I am a 5th-year computer science Ph.D. Candidate at Boston University advised by Professor Vijaya Kolachalama in computer vision as the area of study. Currently, I am working on my proposal exam and thesis on the use of efficient computer vision and deep learning for cancer detection in H&amp;E stained digital pathology images.

Updated on August 25, 2020

Comments

  • Mona Jalal
    Mona Jalal over 3 years

    I have the following code for minimizing the sum of deviation using optim() to find beta0 and beta1 but I am receiving the following errors I am not sure what I am doing wrong:

    sum.abs.dev<-function(beta=c(beta0,beta1),a,b)
    {
      total<-0
      n<-length(b)
      for (i in 1:n)
      {
        total <- total + (b[i]-beta[1]-beta[2]*a[i])
      }
      return(total)
    }
    tlad <- function(y = "farm", x = "land", data="FarmLandArea.csv")
    {
    
      dat <- read.csv(data)
    
      #fit<-lm(dat$farm~dat$land)
      fit<-lm(y~x,data=dat)
      beta.out=optim(fit$coefficients,sum.abs.dev)
    
      return(beta.out)
    }
    

    Here's the error and warnings are receive:

    Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
      contrasts can be applied only to factors with 2 or more levels In addition: Warning message:
    In model.response(mf, "numeric") : NAs introduced by coercion
    

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